PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009788111.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family M-type_MADS
Protein Properties Length: 183aa    MW: 20975.3 Da    PI: 9.8495
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009788111.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF34.23.2e-111757343
                    --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
          SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43
                     ++k+  +v +s+ ++ + K A  LS+LC++++a+iifs t
  XP_009788111.1 17 FKDKRAEKVALSNKQKALSKRAMDLSTLCGIDIAIIIFSIT 57
                    6789999*******************************976 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004320.0016166IPR002100Transcription factor, MADS-box
PROSITE profilePS5006613.834767IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.57E-14980IPR002100Transcription factor, MADS-box
PRINTSPR004043.6E-6929IPR002100Transcription factor, MADS-box
PfamPF003199.9E-101862IPR002100Transcription factor, MADS-box
PRINTSPR004043.6E-62944IPR002100Transcription factor, MADS-box
PRINTSPR004043.6E-64465IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 183 aa     Download sequence    Send to blast
MARMTSQMKS KSEKKKFKDK RAEKVALSNK QKALSKRAMD LSTLCGIDIA IIIFSITAEP  60
FLFGNPNVES VVERFSQAKL PFYLMSSRKT THENTRDGEE NNTMKKKKKK AINEEEKGAT  120
LEIFEPTNLE RLENLNQEID ELEKDLTEKI DELQSKIVVK DPKFVLEMNA TKSSAMPSKW  180
LNL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009787652.11e-130PREDICTED: agamous-like MADS-box protein AGL61
RefseqXP_009788111.11e-130PREDICTED: agamous-like MADS-box protein AGL61
RefseqXP_009797733.11e-130PREDICTED: agamous-like MADS-box protein AGL61
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA22971258
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.12e-07AGAMOUS-like 61